Refereed Publications
Simenstad, C. A. and J. R. Cordell. 1985. Structural dynamics of epibenthic zooplankton in the Columbia River Delta. Verh. Internat. Verein. Limnol. 22:2173-2182.
Cordell, J.R., C.A. Morgan, and C.A. Simenstad. 1992. Occurrence of the Asian calanoid copepod Pseudodiaptomus inopinus in the zooplankton of the Columbia River estuary. J. Crust. Biol. 12(2): 260-269.
Bollens, S.M., B.W. Frost and J.R. Cordell. 1994. Chemical, mechanical, and visual cues in the vertical migration behavior of the marine planktonic copepod Acartia hudsonica. J. Plankton Res. 16 (5): 555-564.
Bollens, S. M., B. W. Frost, and J. R. Cordell. 1995. Diversity of cues in zooplankton vertical migration–a reply to Ringelberg's comment. J. Plankton Res. 17(3): 656-658.
Cordell, J.R. and S.M. Morrison. 1996. The invasive Asian copepod Pseudodiaptomus inopinus in Oregon, Washington, and British Columbia estuaries. Estuaries 19 (3): 629-638.
Simenstad, C.A., J.R. Cordell, L.M. Tear, L.A. Weitkamp, F.L. Paveglio, K.M. Kilbride, K.L. Fresh, and C.E. Grue. 1996. Use of Rodeo and X-77 spreader to control smooth cordgrass (Spartina alterniflora) in a southwestern Washington estuary: II. Effects on benthic microflora and invertebrates. Environ. Toxicol. Chem. 15 (6): 969-978.
Morgan, C. A., J. R. Cordell, and C. A. Simenstad. 1997. Sink or Swim? Copepod population maintenance in the Columbia River estuarine turbidity maxima region. Mar. Ecol. Progr. Ser. 129: 309-317.
Prahl, F.G., L.F. Small, B.A. Sullivan, J.R. Cordell, C.A. Simenstad, B.C. Crump, and J.A. Baross. 1998. Biogeochemical gradients in the lower Columbia River. Hydrobiologica. 361: 37-52.
Simenstad, C.A. and J.R. Cordell. 2000. Ecological assessment criteria for restoring anadromous salmonid habitat in Pacific Northwest estuaries. Ecol. Eng, 15:283-302.
Bollens, S.M., J.R. Cordell, S. Avent, and R. Hooff. 2002. Occurrences, causes and consequences of zooplankton invasions: a brief review, plus two case studies from the northeast Pacific Ocean. Hydrobiologia 480: 47-110.
Tanner, C.D., J.R. Cordell, J. Rubey and L.M. Tear. 2002. Restoration of Freshwater Intertidal Habitat Functions at Spencer Island, Everett, Washington. Rest. Ecol. 10(3): 564-576.
Toft, J.D, J.R. Cordell, and W.C. Fields. 2002. New records of crustaceans (Amphipoda, Isopoda) in the Sacramento/San Joaquin Delta, California, and application of criteria for introduced species. J. Crust. Biol. 22(1): 190-200.
Levings, C.D., J.R. Cordell, S. Ong, and G.E. Piercey. 2003. The origin and identity of invertebrate organisms being transported to Canada's Pacific coast by ballast water. Can. J. Fish. Aquat. Sci. In press.
Toft, J.D., C.A. Simenstad, J.R. Cordell, and L.F. Grimaldo. 2003. The effects of introduced water hyacinth on habitat structure, invertebrate assemblages, and fish diets. Estuaries 26(3): 746-758.
Dean, A.F., S.M. Bollens, C.A. Simenstad, and J.R. Cordell. 2005. Marshes as sources or sinks of an estuarine mysid: demographic patterns and tidal flux of Neomysis kadiakensis at China Camp marsh, San Francisco estuary. Est. Coast. Shelf Sci. 63: 1-11.
Simenstad, C., C. Tanner, C. Crandell, J. White, and J. Cordell. 2005. Challenges of habitat restoration in a heavily urbanized estuary: evaluating the investment. J. Coast. Res. 40: 6-23.
Herwig, R.P, J.R. Cordell, J.C. Perrins, P.A. Dinnel, R.W. Gensemer, W.A. Stubblefield, G.M. Ruiz, J.A. Kopp, M.L. House, and W.J. Cooper. 2006. Ozone treatment of ballast water on the oil tanker S/T Tonsina: chemistry, biology and toxicity. Mar. Ecol. Progr. Ser. 324: 37-55.
Koehler, M.E., K.L. Fresh, D.A. Beauchamp, J.R. Cordell, C.A. Simenstad, and D.E. Seiler. 2006. Diet and bioenergetics of lake-rearing juvenile Chinook salmon in Lake Washington. Trans. Am. Fish. Soc. 135: 1580-1591.Matousek, RC, DW Hill, RP Herwig, JR Cordell, BC Nielsen, NC Ferm, DJ Lawrence, JC Perrins. 2006. Electrolytic sodium hypochlorite system for treatment of ballast water. J. Ship Prod. 22:160-171.
Perrins, J.C., J.R. Cordell, N.C. Ferm, J. Grocock, and R.P. Herwig. 2006. Mesocosm experiments for evaluating the biological efficacy of ozone treatment of marine ballast water. Mar. Poll. Bull. 52: 1756-1767.
Cordell, JR, R Draheim, M Sytsma. 2007. First record of the harpacticoid genus Harpacticella in the Pacific Northwest, USA: another probable introduction. Aquat. Biol. 1:17-20. doi: 10.3354/ab00005
Cordell, JR, M Rasmussen, SM Bollens. 2007. Biology of the introduced copeped Pseudodiaptomus inopinus in a northeast Pacific estuary. Mar. Ecol. Prog. Ser. 333:213-227.
Cordell, JR. 2007. Free-living Copepoda (orders Calanoida, Cyclopoida, and Harpacticoida). Pages 446-464 in JT Carlton (ed), The Light & Smith Manual: Intertidal Invertebrates from Central California to Oregon. The University of California Press.
Cordell, JR. 2007. Commensal and parasitic Copepoda (Orders Cyclopoida, Siphonostomatoida, and Monstrilloida). Pages 464-475 in JT Carlton (ed), The Light & Smith Manual: Intertidal Invertebrates from Central California to Oregon. The University of California Press.
Toft, J.T., J.R. Cordell, C.A. Simenstad, and L. Stamatiou. 2007. Fish distribution, abundance, and behavior along city shoreline types in Puget Sound. N. Am. J. Fish. Manag. 27:465-480.
Bersine, K, VEF Brenneis, RC Draheim, AM Wargo Rub, JE Zamon, RK Litton, SA Hinton, MD Sytsma, JR Cordell, JW Chapman. 2008. Distribution of the invasive New Zealand mudsnail (Potamopyrgus antipodarum) in the Columbia River Estuary and its first recorded occurrence in the diet of juvenile Chinook salmon (Oncorhynchus tshawytscha). Biol. Invasions DOI:10.1007/s10530-007-9213-y.
Cordell, JR, SM Bollens, R Draheim, M Sytsma. 2008. Asian copepods on the move: recent invasions in the Columbia–Snake River system, USA. ICES J. Mar. Sci. DOI: 10.1093/icesjms/fsm195.
Santagata, S, ZR Gasiñaite, E Verling, JR Cordell, K Eason, JS Cohen, K Bacela, G Quilez-Badia, TH Johengen, DF Reid, GM Ruiz. 2008. Effect of osmotic shock as a management strategy to reduce transfers of nonindigenous species among low-salinity ports by ships. Aquat. Invas. 3(1):61-76. DOI: 10.3391/ai.2008.3.1.10.
Technical Reports
Celewycz, A., and J. R. Cordell. 1988. Occurrence of potential prey items of juvenile pink salmon in nearshore waters of Auke Bay, Alaska, in 1987, as sampled with three gear types. In: Vol. I APPRISE Annual Report SFOS APP-100. School of Fisheries and Ocean Scences, Univ. of Alaska, Fairbanks, pp. 471-500.
Cordell, J. R., and C. A. Simenstad. 1981. Community structure and standing stock of epibenthic zooplankton at five sites in Grays Harbor, Washington. Final Rep. to Seattle Dist. U. S. Army Corps of Engineers, Fish. Res. Inst., Univ. Washington, Seattle, WA. FRI-UW-8120. 28 pp.
Cordell, J. R., and C. A. Simenstad. 1981. Community Structure and standing stock of epibenthic zooplankton at Moon Island. Chapter 7 in C. A. Simenstad and D. M. Eggers (eds.) Juvenile salmonid and baitfish distribution, abundance, and prey resources in selected areas of Grays Harbor, Washington. Final Rep. to Seattle Dist., U.S. Army Corps of Engineers. Fish. Res. Inst., Coll. Fish., Univ. Wash., Seattle, WA. FRI-UW-8117. 162 pp.
Cordell, J.R., L.M. Tear, C.A. Simenstad, S.M. Wenger, and W.G. Hood. 1994. Duwamish River Coastal America restoration and reference sites: results and recommendations from year one pilot and monitoring studies. FRI-UW-9416, Fish. Res. Inst., Univ. Wash., Seattle, WA.
Cordell, J.R., L.M. Tear, C.A. Simenstad, and W.G. Hood. 1996. Duwamish River Coastal America restoration and reference sites: results from 1995 monitoring studies. FRI-UW-9612, Fish. Res. Inst., Univ. Wash., Seattle, WA.
Cordell, J. R., L. M. Tear, K. Jensen, and V. Luiting 1997. Duwamish River Coastal America restoration and reference sites: results from 1996 monitoring studies. FRI-UW-9709, Fish. Res. Inst., Univ. Wash., Seattle, WA.
Cordell, J. R., L. M. Tear, K. Jensen, and H. Higgins. 1999. Duwamish River Coastal America restoration and reference sites: results from 1997 monitoring studies. FRI-UW-9903, Fish. Res. Inst., Univ. Wash., Seattle, WA.
Cordell, J. R., H. Higgins, C. Tanner, and J. K. Aitken. 1998. Biological status of fish and invertebrate assemblages in a breached-dike wetland site at Spencer Island, Washington. FRI-UW-9805 , Fish. Res. Inst., Univ. Wash., Seattle, WA.
Cordell, J. R., C. Tanner, and J. K. Aitken. 1999. Fish Assemblages and juvenile salmon diets at a breached-dike wetland site, Spencer Island, Washington 1997-98. FRI-UW-9905. , Fish. Res. Inst., Univ. Wash., Seattle, WA.
Cordell, J. R., M. Stamey, C. Tanner, and J. K. Aitken. 2001. Fish Assemblages and juvenile salmon diets at a breached-dike wetland site, Spencer Island, Washington 1999. SAFS-UW-0104, School of Aquatic and Fishery Sciences, Univ. Wash., Seattle, WA.
Cordell, J. R., L. M. Tear, and K. Jensen. 2002. Biological monitoring at Duwamish River Coastal America restoration and reference sites: a seven-year retrospective. SAFS-UW-0108, School of Aquatic and Fishery Sciences, Univ. Wash., Seattle, WA.
Kinney, W. J., J. R. Cordell, and C. A. Simenstad. 1981. Community structure and standing stock of neritic zooplankton. Chapter 6 in C. A. Simenstad and D. M. Eggers (eds.) Juvenile salmonid and baitfish distribution, abundance, and prey resources in selected areas of Grays Harbor, Washington. Final Rep. to Seattle Dist., U.S. Army Corps of Engineers. Fish. Res. Inst., Coll. Fish., Univ. Wash., Seattle, WA. FRI-UW-8117. 162 pp.
Houghton, J., D. Eggers, C. Simenstad, W. Kinney, J. Cordell, G. Williams, H. Buechner, A. Kost and A. Zellinger. 1981. Epibenthic invertebrates of the Columbia River Estuary. Annual Rep. to Col. R. Est. Data Dev. Prog., Pac. NW River Basins Comm., Dames and Moore and Fish. Res. Inst., Univ. Wash., Seattle, WA. 82 pp.
Shreffler, D.K., R.M. Thom, C.A Simenstad, J.R. Cordell, and E.O. Salo. 1990. The Lincoln Avenue wetland system in the puyallup River estuary, Washington: Phase III report; Year three monitoring, January-December 1988. FRI-UW-8916,Rep. to Port of Tacoma, Fish. Res. Inst., Univ. Wash., Seattle, WA.
Simenstad, C. A., W. J. Kinney, S. S. Parker, E. O. Salo, J. R. Cordell, and H. Buechner. 1980. Prey community structure and trophic ecology of outmigrating juvenile chum and pink salmon in Hood Canal, Washington: a synthesis of three years' studies, 1977-79. Final Rep. to Wash. Dept. Fish., Fish. Res. Inst., Univ. Wash., Seattle, WA. FRI-UW-8026. 113 pp.
Simenstad, C. A. and J. R. Cordell. 1988. Assemblage structure, microhabitat distribution, and food web linkages of epibenthic crustaceans in Padilla Bay, Washington. NOAA Tech. Rep. Wer. OCRU/MEMD, FRI-UW-8813, Fish. Res. Inst., Univ. Wash., Seattle, WA. 60 pp.
Simenstad, C.A., R.M. Thom, K.A. Kuzis, J.R. Cordell, and D. K. Shreffler. 1988. Nearshore community studies of Neah Bay, Washington. FRI-UW-8811, Final Rep. to U.S. Army Corps of Engineers, Seattle Dist., Fish. Res. Inst., Univ. Wash., Seattle, WA. 200 pp.
Simenstad, C.A., J.R. Cordell, R.C. Wissmar, K.L. Fresh, S. Schroder, M. Carr, and M. Berg. 1988. Assemblage structure, microhabitat distribution, and food web linkages of epibenthic crustaceans in Padilla Bay National Estuarine Research Reserve, Washington. NOAA Tech. Ser. OCRM/MEMD, FRI-UW-8813, Fish. Res. Inst., Univ. Wash., Seattle, WA. 60 pp.
Simenstad, C.A., and J.R. Cordell. 1989. Effects of sevin application on littoral flat meiofauna: Preliminary sampling on Willapa Bay, June-July 1988. FRI-UW-8804, Fish. Res. inst., Univ. Wash., Seattle, WA.
Simenstad, C.A., J.R. Cordell, and L.A. Weitkamp. 1991. Effects of substrate modification on littoral flat meiofauna: assemblage structure changes associated with adding gravel. FRI-UW-9111, Fish. Res. Inst., Univ. Wash., Seattle, WA.
Simenstad, C.A., J. R. Cordell, W.G. Hood, and J.A. Miller. 1992. Ecological status of a created estuarine slough in the Chehalis River estuary. FRI-UW-9206, Fish. Res. Inst., Univ. Wash., Seattle, WA.
Simenstad, C.A., L.A. Weitkamp, and J.R. Cordell. 1993. Effects of substrate modification on littoral flat epibenthos: assemblage structure changes associated with predator exclusion nets. FRI-UW-9310, Fish. Res. Inst., Univ. Wash., Seattle, WA.
Simenstad, C.A., J.R. Cordell, W.G. Hood, and B.E. Feist. 1997. Ecological status of a created estuarine slough in the chehalis river estuary: assessment of created and natural estuarine sloughs, January-December 1995.
Thom, R., R. Albright, C. Simenstad, J. Hampel, J. Cordell, and K. Chew. 1984. Intertidal and shallow subtidal benthic ecology. Vol. IV in K. K. Chew and Q. J. Stober (eds.), Renton sewage treatment plant study. FRI-UW-8413, Final Rep. to Municipal. Metro. Seattle, Fish. Res. Inst., Univ. Wash., Seattle, WA. 172 pp.
Thom, R., C. A. Simenstad, J. R. Cordell, and E. O. Salo. 1986. Early successional development of a benthic-epibenthic community at a newly constructed beach in Slip 1, Commencement Bay, Washington: Initial observations 1985. FRI-UW-86-3, Final Rep. to Port of Tacoma, Fish. Res. Inst., Univ. Wash., Seattle, WA. 42 pp.
Thom, R. M., C.A. Simenstad, D.K. Shreffler, J.R. Cordell, and E.O. Salo. 1988. The Lincoln Street wetland system in the puyallup River estuary, Washington: Phase II report; Year two monitoring, January-December 1987. FRI-UW-8812,Rep. to Port of Tacoma, Fish. Res. Inst., Univ. Wash., Seattle, WA.
Thom, R.M., C.A. Simenstad, J.R. Cordell, and E.O. Salo. 1988. Fisheries mitigation plan for expansion of moorage at Blaine Marina, Blaine, Washington. FRI-UW-8817, Final rep. to Port of Bellingham, Fish. Res. Inst., Univ. Wash., Seattle, WA. 24 pp.
Thom, R.M., C.A. Simenstad, J.R. Cordell, and E.O. Salo. 1989. Fish and their epibenthic prey in a marina and adjacent mudflats and eelgrass meadow in a small estuarine bay. FRI-UW-8901, Rep. for The Port of Bellingham, Fish. Res. Inst., Univ. Wash., Seattle, WA. 27 pp.
Thom, R. M., C.A. Simenstad, J.R. Cordell, D. K. Shreffler, and E.O. Salo. 1990. The Lincoln Street wetland system in the puyallup River estuary, Washington: Phase IV report; Year four monitoring, January-December 1989. FRI-UW-9004,Rep. to Port of Tacoma, Fish. Res. Inst., Univ. Wash., Seattle, WA.
Thom, R. M., C.A. Simenstad, J.R. Cordell, and L.A. Hamilton. 1991. The Gog-Li-Hi-Ti wetland system in the puyallup River estuary, Washington: Phase V report: Year five monitoring, January-December 1990. FRI-UW-9108, Final Rep. to Port of Tacoma, Fish. Res. Inst., Univ. Wash., Seattle, WA.
Wyllie-Echeverria, S., J.R. Cordell, J. Haddad, L.M. Tear, and M. Hershman. 1995. Biological monitoring of vegetation characteristics and epibenthic organisms from transplanted and reference eelgrass patches at LaConner, Skagit County, Washihngton: Final Report. SMA 95-3, School of Marine Affairs, Univ. Wash., Seattle WA.
Other Publications
Cohen, A.N., C.E. Mills, H. Berry, M.J. Wonham, B. Bingham, B. Bookheim, J.T. Carlton, J.W. Chapman, J.R. Cordell, L.H. Harris, T. Klinger, A. Kohn, C.C. Lambert, G. Lambert, K. Li, D. Secord and J. Toft. 1998. Report of the Puget Sound Expedition, September 8-16, 1998; A Rapid Assessment Survey of Nonindigenous Species in the Shallow Waters of Puget Sound. For the Washington State Department of Natural Resources, Olympia, WA and the United States Fish and Wildlife Service, Lacey, WA.
Cohen A.N., H. D. Berry, C, E. Mills, D. Milne, K. Britton-Simmons, M. J. Wonham, D. L. Secord, J. A. Barkas, B. Bingham, B. E. Bookheim, J. E. Byers, J. W. Chapman, J. R. Cordell, B. Dumbauld, A. Fukuyama, L. H. Harris, A. J. Kohn, K. Li, T. F. Mumford Jr., V. Radashevsky, A. T. Sewell, K. Welch. 2001. Washington State Exotics Expedition 2000: A Rapid Survey of Exotic Species in the Shallow Waters of Elliott Bay, Totten and Eld Inlets, and Willapa Bay. For the Washington State Department of Natural Resources, Olympia, WA and the United States Fish and Wildlife Service, Lacey, WA.
Cordell, J. R. 1986. Structure and dynamics of an epibenthic harpacticoid assemblage and the role of predation by juvenile salmon. M.S. thesis, University of Washington. 134 pp.
Cordell, J. R., and C. A. Simenstad. 1988. Epibenthic harpacticoid copepods as indicators of wetland fitness. Pp 422-431 in Proc. First Annual Meeting on Puget Sound Research. Puget Sound Wat. Qual. Auth., Seattle, Wash. Vol I and II, 789 pp.
Giles, S.L. and J.R. Cordell. 1999. Zooplankton composition and abundance in Budd Inlet, Washington. Pp. 634-642 in: Puget Sound Research '98: From Basic Science to Resource Management, Puget Sound Water Quality Action Team, Olympia, Washington.
Shreffler, D.A., R.M. Thom, C.A. Simenstad, J.R. Cordell, and E.O. Salo. 1988. Habitat utilization of a restored wetland system by juvenile salmonids. Pp. 504-514 in Proc. First Annual Meeting on Puget Sound Research. Puget Sound Wat. Qual. Auth., Seattle, WA. Vol. I and II, 789 pp.
Cordell, J.R., C.A. Morgan, and C.A. Simenstad. 1993. The Asian calanoid copepod Pseudodiaptomus inopinus in Pacific Northwest Rivers–biology of an invasive zooplankter. Northwest Env. J. 8(1): 154-155.
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