Publications
2012
Bracis, C, JJ Anderson. 2012. An investigation of the geomagnetic imprinting hypothesis for salmon. Fish. Ocean. 21:170–181. doi:10.1111/j.1365-2419.2012.00617.x.
Enders, EC, MH Gessel, JJ Anderson, JG Williams. 2012. Effects of decelerating and accelerating flows on juvenile salmonid behavior. Trans. Am. Fish. Soc. 141:357-364.
Kemp, PS, JJ Anderson, AS Voles. 2012. Quantifying behaviour of migratory fish: Application of signal detection theory to fisheries engineering. Ecol. Engineer. 41: 22-31. doi:10.1016/j.ecoleng.2011.12.013.
2011
Beer, WN, JJ Anderson. 2011. Sensitivity of juvenile salmonid growth to future climate trends. River Res. Applic. 27(5):663-669. doi: 10.1002/rra.1390.
2010
Anderson, JJ. 2010. Ratio- and predator-dependent functional forms for predators optimally foraging in patches. The Amer. Natur. 175(2):240-249.
Beer, WN, JJ Anderson. 2010. Sensitivity of juvenile salmonid growth to future climate trends. Riv. Res. Applic. Online. DOI: 10.1002/rra.1390.
2009
Anderson, JJ, WN Beer. 2009. Oceanic, riverine, and genetic influences on spring chinook salmon migration timing. Ecol. Applic. 19(8):1989–2003.
Gurarie, E. J.J. Anderson and R. W. Zabel. 2009. Incorporating population heterogeneity into models of animal dispersal and movement. Ecology 90: 2233-2242.
Lemasson, B.H., J.J. Anderson and R.A. Goodwin. 2009. Collective motion in animal groups from a neurobiological perspective: The adaptive benefits of dynamic sensory loads and selective attention. J. Theoret. Biol. 261:501-510.
Li, T. and J.J. Anderson. 2009. The vitality model: A way to understand population survival and demographic heterogeneity. Theoretical Population Biology. http://dx.doi.org/10.1016/j.tpb.2009.05.004
2008
Anderson, J. J., M. C. Gildea, D. W. Williams, and T. Li. 2008. Linking growth, survival and heterogeneity through vitality. American Naturalist 171, E20-E43. http://www.journals.uchicago.edu/doi/full/10.1086/524199
Nestler, J. M., Goodwin, R. A., Smith, D. L., Anderson, J. J., and S. Li. 2008. Optimum Fish Passage and Guidance Designs are Based in the Hydrogeomorphology of Natural Rivers. River Research and Applications 24: 148–168.\
Zabel, R. W. J. Faulkner, S.G. Smith, J. J. Anderson C. Van Holmes, N. Beer, S. Iltis, J. Krinkie, G. Fredicks, B. Bellerud, J. Sweet and A. Giorgi. 2008. Comprehensive Passage (COMPASS) Model: a model of downstream migration and survival of juvenile salmonids through a hydropower system. Hydrobiologia 609:289-300.
2007
Goodwin, R. A., J. M. Nestler, J. J. Anderson, L. J. Weber. 2007. A New Tool to Forecast Fish Movement and Passage. Hydro Review 27(4):58-71
Lindley, S. T., R. S. Schick, E. Ethan Mora, P. B. Adams, J. J. Anderson, Sheila Greene, C. Hanson, B.P. May, D. McEwan, R. B. MacFarlane, C. Swanson, and J. G. Williams. 2007. Framework for Assessing Viability of Threatened and Endangered Chinook Salmon and Steelhead in the Sacramento-San Joaquin Basin" San Francisco Estuary and Watershed Science Vol. 5, Iss. 1.
Nestler, J. M., Goodwin, R. A., Smith, D. L., and Anderson, J. J. 2007. A Mathematical and Conceptual Framework for Ecohydraulics. Chapter 12 in Hydroecology and Ecohydrology: Past, Present and Future, Hydroecology and Ecohydrology: Past, Present and Future (eds. Wood, Hannah, Sadler) John Wiley & Sons.
2006
Goodwin, R. A., J. M. Nestler, J. J. Anderson, L. J. Weber, and D. P. Loucks. 2006. Forecasting 3-D fish movement behavior using a Eulerian–Lagrangian–agent method (ELAM), Ecological Modelling 192:197-223.
Lindley, S. T., R. S. Schick, A. Agrawal, M. Goslin, T. E. Pearson, E. Mora, J. J. Anderson, B. May, S. Greene, C. Hanson, A. Low, D. McEwan, R. B. MacFarlane, C. Swanson, and J. G. Williams. 2006. Historical population structure of Central Valley steelhead and its alteration by dams. S. Francisco Estuary Watershed Science. 4(1): Article 3. 21 p.
Salinger, D. H, and J.J. Anderson. 2006. Effects of Water Temperature and Flow on Migration Rate of Adult Salmon. Transactions of the American Fisheries Society 135:188-199.
Weber, L.J., R.A. Goodwin, S. Li, J.M. Nestler, and J.J. Anderson. 2006. Application of an Eulerian–Lagrangian–Agent method (ELAM) to rank alternative designs of a juvenile fish passage facility. J. Hydroinformatics 8:271-295.
2005
Anderson J. J., E. Gurarie, and R. W. Zabel. 2005. Mean free-path length theory of predator-prey interactions: application to juvenile salmon migration. Ecological Modelling 186:196-211.
Hyun, S., R. W. Hilborn, J. J. Anderson, and B. Ernst. 2005. A statistical model for in-season forecasts of sockeye salmon returns to the Bristol Bay districts, Canadian Journal of Fisheries and Aquatic Sciences 62:1665-1680.
Springman, K. R., G. Kurath, J. J. Anderson, J. Emlen. 2005. Contaminants Viral Cofactors: Assessing Indirect Population Effects with the Vitality Model. Aquatic Toxicology 71:13-23.
2003
Salinger, D. H, and J.J. Anderson and O. Hamel. 2003. A parameter fitting routine for the vitality based survival model. Ecological Modeling 166(3): 287-294.
2002
Anderson, J. J. 2002. An agent-based event drive foraging model. Natural Resource Modeling. Volume 15, Number 1, p 55-82.
Hamel, O.S. and J.J. Anderson. 2002. The relationship of antigen density to bacterial load in spawning female pacific salmon infected with bacterial kidney disease. Diseases of Aquatic Organisms 51:85-92.
2001
Beer, W. N. and Anderson, J. J. 2001. Effects of spawning behavior and temperature profiles on salmon emergence: Interpretations of a growth model for Methow river chinook. Canadian Journal of Fisheries and Aquatic Sciences. 58(5):943-949.
Steel, E. A., P. Guttorp, J.J. Anderson and D.C. Caccia. 2001. Modeling juvenile migration using a simple Markov chain. Journal of Agricultural, Biological and Environmental statistics 6(1):80-88.
2000
Anderson, J.J. 2000. A vitality based model relating stressors and environmental properties to organism survival. Ecological Monographs 70(3) 117-142.
Anderson, J.J. 2000. Decadal climate cycles and declining Columbia River salmon. In Sustainable Fisheries Management: Pacific Salmon. ed. E. Knudsen. CRC Press, Boca Raton. P. 467-484.
Anderson, J. J., R. W. Zabel, and R. H. Hinrichsen. 2000. Modeling the impacts of John Day drawdown on the survival of salmonid stocks. Attachment F in Salmon Recovery through John Day Reservoir. John Day Drawdown Phase I Study: Biological/Environmental Technical Appendix Aquatic Resource Section. U.S. Army Corps of Engineers Portland district.
Norris, J. S. Hyun, J.J. Anderson. 2000. Ocean Distribution of Columbia River Upriver Bright Fall Chinook Salmon Stocks. Pages 221-232 in Recent Changes in Ocean Production of the Pacific Ocean, Edited by J.H. Hella, Y. Ishida, D. Noakes and V. Radchenko. North Pacific Anadromous fish Commission Bulletin # 2. Vancouver Canada.
1999
Helu, S.L., J.J. Anderson, D.B. Sampson. 1999. An individual-based fishery model and assessing fishery stability. Natural Resource Modeling 12(2) 213-247.
1998
Zabel, R.W., J.J. Anderson, and P.A. Shaw. 1998. A multiple reach model describing the migratory behavior of Snake River yearling chinook salmon (Oncorhynchus tshawytscha). Canadian Journal of Fisheries and Aquatic Sciences 55:658-667.
1997
Beer, W. N. and Anderson, J. J. 1997. Modeling the growth of salmonid embryos. J. theor. Biol. 189:297-306.
Zabel, R. and J.J. Anderson. 1997. A model of the travel time of migrating juvenile salmon, with an application to Snake River spring chinook salmon. North American Journal of Fisheries Management 17:93-100.
1996
Anderson, J.J. 1996. Review of the influence of climate on salmon. In Plan for Analyzing and Testing Hypotheses (PATH): Final report on retrospective analyses for fiscal year 1996. Compiled and edited by ESSA Technologies Ltd., Vancouver, B.C.
1993
Nemeth R. and J.J. Anderson. 1993. Response of juvenile salmon to light. North American Journal of Fisheries Management. 12:684-692.
1992
Anderson, J.J. 1992. A vitality based stochastic model for organism survival. In Individual-Based Models and Approaches in Ecology: Populations, Communities and Ecosystems. Editors DeAngelis and Gross, Chapman Hall, New York. p 256-277.
1990
Ostrander, G.K., J.J. Anderson, J. P. Fisher, M. L. Landolt and R. M. Kocan. 1990. Decreased performance of rainbow trout emergence behaviors following exposure to benzo(a)pyrene. Fishery Bull. 88:51-55.
1989
Morison, R. and J.J. Anderson. 1989. Risk assessment-risk management: The need for a synthesis. P 651-660. In The Analysis, Communication and Perception of Risk. Eds. B.J. Garrick and W.C. Gekler, Plenum Press.
1988
Anderson, J.J. 1988. Diverting migrating fish past turbines. The Northwest Environmental Journal 4:109-128.
Anderson, J.J. 1988. A neural model for visual activation of startle behavior in fish. Journal of Theoretical Biology 131:289-305.
1987
Anderson, J.J and A.H. Devol. 1987. The extent and intensity of the anoxic zone of basins and fords. Deep-Sea Research 34:927-944.
1986
Anderson, J.J. and P.J. Sullivan. 1986. A dynamic basis for using a truncated normal distribution to describe variability of chemical substances in aquatic environments. Journal of Theoretical Biology 123:213-220.
1985
Anderson, J.J. 1985. A theory for attitude and behavior applied to an election survey. Behavioral Science 30(4): 219-229.
1984
Okubo, A. and J.J. Anderson. 1984. Mathematical models for zooplankton swarms: Their formation and maintenance. Eos 40:731-732.
Devol, A.H., J.J. Anderson, K. Kuivila and J.W. Murray. 1984. A model for coupled sulfate reduction and methane oxidation in the sediments of Saanich Inlet. Geochim. Cosmochim. Acta 48:1-12.
1983
Anderson, J.J. and Sutomo. 1983. A biologically meaningful probability description of plankton stocks. Journal of Marine Research in Indonesia 23:31-41.
Sutomo and J.J. Anderson. 1983. Phytoplankton and zooplankton in Ambon Bay. Journal of Marine Research in Indonesia, 23:1-11.
Sutomo, and J.J. Anderson. 1983. A comparison of unit volume and unit area expressions of vertical plankton hauls. Journal of Marine Research in Indonesia. 23:00
Wenno, L.F. and J.J. Anderson. 1983. Evidence for tidal upwelling across the sill of Ambon Bay. Journal of Marine Research in Indonesia. 23:00
1982
Anderson, J.J., A. Okubo, A.S. Robbins and F.A. Richards. 1982. A model for nitrite and nitrate in oceanic oxygen minimum zones. Deep-Sea Research, 29:1113-1140.
Anderson, J.J. 1982. The nitrite-oxygen interface at the top of the oxygen minimum zone in the eastern tropical North Pacific. Deep-Sea Research 29:1193-1201.
Anderson, J.J. and A. Okubo. 1982. Resolution of chemical properties with a vertical profiling pump. Deep-Sea Research 29:1013-1019.
1981
Anderson, J.J. 1981. A stochastic model for the size of fish schools. U.S. Fish Bul, 79:315-323.
1979
Anderson, J.J. 1979. Nutrient chemistry in the tropical North Pacific: Domes sites A, B, and C. Pages 113-162 in E. Bischoff and D. Piper (eds). Marine geology and Oceanography of the Pacific Manganese Nodule Province, Plenum, Marine Science Series, no. 9.
1977
Anderson, J.J. 1977. Identification and tracing of water masses with an application near the Galalpagos Islands. University of Washington, Ph.D. Thesis, 144 pp.
1974
Anderson, J.J and E.C. Carmack. 1974. Observations of chemical and physical fine structure in a strong pycnocline, Sea of Marmara. Deep-Sea Research 21:877-886.
1973
Anderson, J.J and E.C. Carmack. 1973. Some chemical and physical properties of the Gulf of Corinth. Estuarine and Coastal Marine Science 1:195-202.
Anderson, J.J and A.H. Devol. 1973. Deep water renewal in Saanich Inlet, an intermediately anoxic basin. Estuarine and Coastal Marine Science 1:1-10.
Anderson, J.J 1973. Silicate water mass analysis off the Northwest Coast of Africa. Investigations Pesqeras, sup. 2:53-64.